Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQLCVALDLEKKEDNLSLLQELKGLDLWAKVGLRSFIRDGATFLDEIRKIDGNFKIFLDLKLYDIPYTMANAALECAKLDIDMLTVHLSSAKSALTILMQRLNAL-KKRPLIMGVSALTSFSEEEFL-MVYNAPLKTQAITLSAIGKESGIDGVVCSVFESLAIKEALGKGFLTLTPGIRLDKNDKEDQERVANAKEAKQNLSDFIVVGRPIYQAKEPREVVLELLKDC
1JJK Chain:A ((17-234))
--VVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMFTLFGPQFVRELQQ--RGFDIFLDLKFHDIPNTAAHAVAAAADLGVWMVNVHASGGARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGVVCSAQEAVRFKQVFGQEFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINASL
General information:
TITO was launched using:
RESULT:
Template:
1JJK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -137441 for 1814 contacts (-75.8/contact) +
2D Compatibility (PS) -23555 + (NN) -10701 + (LL) 456
1D Compatibility (HY) -14400 + (ID) 3600
Total energy: -189241.0 ( -104.32 by residue)
QMean score : 0.490
(partial model without unconserved sides chains):
PDB file :
Tito_1JJK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1JJK-query.scw
PDB file :
Tito_Scwrl_1JJK.pdb
: