Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNEIILITGAYGMVGQNTALYFKKNK----PDVTLLTPKKSELYLLDKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKAINLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLAR-FIALAYENIAQMPSVMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDSSKPVGMQQKLMDISKQKALKWELEI-PLEQGIKEAYEYYLKLLEV |
4BKP Chain:A ((25-327)) | ----ILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADL--TDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSA-LTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDNYEQ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4BKP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -129375 for 2465 contacts (-52.5/contact) +
2D Compatibility (PS) -31762 + (NN) -10322 + (LL) 624
1D Compatibility (HY) -15600 + (ID) 4200
Total energy: -190635.0 ( -77.34 by residue)
QMean score : 0.508
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