Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKRMLAEFEKIQAILMAFPHEFGDWAYCIEEARESFLHIIQTIAKHAKVLVCVHT----NDTIGYETLK--NLPGVEIARIDTNDTWARDF-GAISVENHGVLECLDFGFNGWGLKYPSNLDNQVNFKLKHLGFLKHPLKTMPYILEGGSIESDGAGSILTNTQCLLEKNRNPHLNQNGIETMLKKELGAKQVLWYSYGYLKGDDTDSHTDTLARFLNKDTIVYSACEDENDEHYTALKKMQEELKTFKKLDGTPYKLIPLEIPKAVYNENQQRLPATYVNFLLCNNALIVPTYNDPN--DTLILETLRQHTP-LEVIGVDCNTLIKQHGSLHCVTMQLY |
| 5AK8 Chain:A ((10-289)) | --RAIAEYERSAAVLVRYP--FG-----------IPMELIKELAKNDKVITIVASESQKNTVITQYTQSGVNLSNCDFIIAKTDSYWTRDYTGWFAMYDTNKVGLVDFIYN----RPRPNDDEFPKYEAQYLGIEMFGMKLK---QTGGNYMTDGYGSAV---QSHIAYTENSSLSQAQVNQKMKDYLG---ITHHDVVQDPNGEYINHVDCWGKYLAPNKILIRKVPDNHPQH-QALEDMAAYFAAQTCAWGTKY-----EVYRALATNEQ-----PYTNSLILNNRVFVPV-NGPASVDNDALNVYKTAMPGYEIIGVKGASGTPWLGTDALHARTHE |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AK8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -115926 for 2160 contacts (-53.7/contact) +
2D Compatibility (PS) -29681 + (NN) -15460 + (LL) 3112
1D Compatibility (HY) -14400 + (ID) 3850
Total energy: -176205.0 ( -81.58 by residue)
QMean score : 0.415
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