Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKIFGTDGVRGKAGVKLTPMFVMRLGIAAGLYFKKHSQTNKILIGKDTRKSGYMVENALVSALTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNPFEDNGIKFFNSYGYKLKEEEERAIEEIFHDEELLHSSYKVGESVGSAKRIDDVIGRYIAHLKHSFPKHLNLQKLRIVLDTANGAAYKVAPVVFSELGADVLVINDEPNGCNINEQCGALHPNQLSQ---EVKKYRADLGFAFDGDADRLVVVDNLGNIVHGDKLLGVLGVYQKSKNALSSQAV-VATSMSNLALKEYLKSQDLELKHCAIGDKFVSECMRLNKANFGGEQSGHIIFSD-YAKTGDGLVCALQVSALVLESKLVSSIALNPFELYPQSL----VNLNI---QKKPPLESLKGYSAL----LKELDQLEIRH-----LIRYSGTENKLRILLEAKDEKLLESKMQELKEFFEGQLC |
| 1PCM Chain:X ((13-452)) | --IFRAYDIRGVVGDTLTAETAYWIGRAIGSESLARGEPC-VAVGRDGRLSGPELVKQLIQGLVDCGCQVSDVGMVPTPVLYYAANVLEGKSGVMLTGSHNPPDYNGFKIVVA-GETLANEQIQALRERIEKNDL-------ASGVGSVEQV-DILPRYFKQIRDDIAMA---KPMKVVVDCGNGVAGVIAPQLIEALGCSVIPLYCEVDGNFPNHHPDPGKPENLKDLIAKVKAENADLGLAFDGDGDRVGVVTNTGTIIYPDRLLMLFAKDVVSRNPGADIIFDVKCTRRLIALISGYGGRPVMWK---TGHSLIKKKMKETGALLAGEMSGHVFFKERWFGFDDGIYSAARLLEILSQDQRDSE---HVFSAFPSDISTPEINITVTEDSKFAIIEALQRDAQWGEGNITTLDGVRVDYPKGWGLVRASNTTPVLVLRFEADTEEELE----RIKTVFRNQLK |
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General information:
TITO was launched using:
| RESULT:
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Template: 1PCM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -173760 for 3821 contacts (-45.5/contact) +
2D Compatibility (PS) -43947 + (NN) -15532 + (LL) 2268
1D Compatibility (HY) -24400 + (ID) 6050
Total energy: -261421.0 ( -68.42 by residue)
QMean score : 0.446
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