Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSMYYAFRDRKQKKREFRSLWVVRINAACRMHNTSYSRFMHALKVANIELDRKVLADMAMNDMQAFKSVLESVKEHL
3CF5 Chain:N ((3-112))
-RAKTGIVRRRRHKKVLKRAKGFWGSRSKQYRNAFQTLLNAATYEYRDRRNKKRDFRRLWIQRINAGARLHGMNYSTFINGLKRANIDLNRKVLADIAAREPEAFKALVDASRNAR
General information:
TITO was launched using:
RESULT:
Template:
3CF5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -18669 for 648 contacts (-28.8/contact) +
2D Compatibility (PS) -12019 + (NN) -5481 + (LL) 208
1D Compatibility (HY) -7600 + (ID) 2950
Total energy: -46511.0 ( -71.78 by residue)
QMean score : 0.535
(partial model without unconserved sides chains):
PDB file :
Tito_3CF5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CF5-query.scw
PDB file :
Tito_Scwrl_3CF5.pdb
: