Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEFYQVYDPLGHIWLSALVALSPIALFFISLIVFKLKGYSAGFLSLALSILIALFVYKMPVQMVSASFFYGFLYGLWPIAWIVIAAIFLYNLSVKSGYFEILKESILSLTPDHRILVILIGFCFGSFLEGAIGFGGPVAITAAILVGLGLNPLYAAGLCLIANTAPVAFGAVGIPITAMASVVGIPELEISQMVGRVLPIFSIGIPFFIVFLMDGFRGIRETFPAVAVTGFSFAIAQFLSSNYLGPQLPDIISALVSLVATTLFLKFWQPKHIFTSNGKEPTISTEKHHICKVVVAWMPFVLLTITIIIWTQPWFKALFKEGGALAFSNFAFEFNSISQKIFKTVPIVTEATNFPVVFKLPLILTTGTSIFLAALLSVFLLRVKISDAIGVFGATLKEMRLPILTIGVVLAFAYVANYSGMSATLALALADTGHVFTFLSPMVGWLGVFLTGSDTSSNLLFGSLQMLIATQLGL-PEVLFLAANTSGGVVGKMISPQSIAIACAAVGLVGKESELFRFTVKYSIALAIIMGIVFTLIAYVFPFIIPVTPT |
4US8 Chain:A ((398-446)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MIAPGVGLEPDQLVLVANPMGGTFGYKFSPTSEALVAVAAMATGRPVHLRYNYQQQQQYTGKRSPWEMNVKFAAKKDGTLLAME |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 4US8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -22225 for 226 contacts (-98.3/contact) +
2D Compatibility (PS) -4944 + (NN) -1491 + (LL) 39248
1D Compatibility (HY) -1200 + (ID) 950
Total energy: 8438.0 ( 37.34 by residue)
QMean score : 0.179
|
|
|