Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKEKNFWPLGIMSVLIFGLGIVVFLVVFALKNSPKNDLVYFKGHNEVDLNFNAMLKTYENFKSNYRFSVGLKPLTESPKTPILPYFSKGTHGDKKIQENLLNNALILEKSNTLYAQLQPLKPALDSPNIQVYLAFYPSQSQPRLLGTLDC----KNACEPLKFDLLEGDKVGRYKILFKFVFKNKEELILEQLAFFK |
3LMZ Chain:A ((83-175)) | --------------------------------------IYMKSEEEIDRAFD------------YAKRVGVKLIVGVPNYELLPYV------DKKVKEYDFHYAIHLHGPD--------IKTYPDATDVWV----HTKDLDPRIGMCLDVGHDLRNGCDPVADLKKYHTRVFDMHIKDVTDSSKAGVGIEIGRGKID |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LMZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 3957 for 619 contacts (6.4/contact) +
2D Compatibility (PS) -8893 + (NN) -196 + (LL) 4984
1D Compatibility (HY) -7200 + (ID) 1450
Total energy: -8798.0 ( -14.21 by residue)
QMean score : 0.071
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