Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTEMELKLIKIDTSHYFEKKPGLGERMDYAGRCYYNKFQRVNAMLTSSLIQKHLKREIEIAHNLILRNDKVENIVFDYNGRNPERFYHKAQLLLREEGFMNFTAYNTKTPGHLHLYVHK---GHTELGEGERLIKTLSMKLAQGLPKEWRVFPSNEWPKEFNILALPYEVFAKERGSSWAKHL
3W61 Chain:A ((22-69))
------------------------------------------------------------------------------------------------RGVIHLRARYV-GQD-IWADMIIGVDPENTVEQAHEICEAVQAAVCGKIRRIESLAVSAEARE------------------------
General information:
TITO was launched using:
RESULT:
Template:
3W61.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12056 for 191 contacts (-63.1/contact) +
2D Compatibility (PS) -4999 + (NN) -2888 + (LL) 9468
1D Compatibility (HY) -2800 + (ID) 100
Total energy: -13375.0 ( -70.03 by residue)
QMean score : 0.424
(partial model without unconserved sides chains):
PDB file :
Tito_3W61.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3W61-query.scw
PDB file :
Tito_Scwrl_3W61.pdb
: