Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4CK0 Chain:A ((16-121))
------------FTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSHF--
General information:
TITO was launched using:
RESULT:
Template:
4CK0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -50854 for 624 contacts (-81.5/contact) +
2D Compatibility (PS) -11189 + (NN) -6775 + (LL) 240
1D Compatibility (HY) -9600 + (ID) 2250
Total energy: -80428.0 ( -128.89 by residue)
QMean score : 0.302
(partial model without unconserved sides chains):
PDB file :
Tito_4CK0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CK0-query.scw
PDB file :
Tito_Scwrl_4CK0.pdb
: