Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MEHNGHDKLNGVLRGFLGDSFTLDGKEGGLNMSKMLEFIKKEKPKMNVLLMGATGVGKSSLINALFGKEITKTGVGKPITQHLEKYIDEEKGLILWDTKGIEDKDYHDTMQSIKKEM-EDSFKTLDEKEAIDVAYLCVKETSSRVQERERELL--SFAKHWNIPTIVVFTHTQAEAGDAFVQETKGIIDEEWGFKGFVRAYVRVNSVAFSFRGLKVPVEGLEELVDETKKCLSDAEKNKKRHFLSIQRVKIQERKQAMIEECKTIIHVASGAAGVAGLIPIPFSDALAIAPIQAGMIYKMNDAFGMDLDKSVGASLVAGLLGVTAVAQVGRTLVNGFLKFIPVVGSVAGGATAAVITEGIGFAYLKVLEKCFNDETGEVNLPGEVGMITSLFKENYLNLDTIKKLKP |
3PQC Chain:A ((26-141)) | -----------------------------------------------VAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVNSKYYFV-DLPGYGYAKVSKKERMLWKRLVEDYFKN---RWSLQMVFLLV---DGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLK----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3PQC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -36059 for 733 contacts (-49.2/contact) +
2D Compatibility (PS) -12193 + (NN) -3728 + (LL) 16480
1D Compatibility (HY) -12000 + (ID) 1650
Total energy: -49150.0 ( -67.05 by residue)
QMean score : 0.524
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