Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKVYPQVLSIAGSDSGGGAGIQADLKAFQTFGVFGTSVITCITAQNTQGVHGVYPLSVESVKAQILAIRDDFSIKAFKMGALCNAQIIECVANALETCDFGLCVLDPVMVAKNGALLLEEEAILSLKKRLLPKTNLLTPNLPEVYALTGVQARDDKSASKAMGVLRDLGVKNAVIKGGHTEHFQGEFSNDWVFLEDAEFILSA--KRFNTKNTHGTGCTLSSLIVGLLAQGLDLKNAITKAKELLTIIIQNPLNIGHGHGPLNLWSIKKHV |
| 4YL5 Chain:A ((9-245)) | --VRPTVLCFSGLDPSGGAGLQADIEAIGQSGAHAAIACTALTIQNSQQVFGFEATSKELLLAQANAVVGDLPIKCVKSGMLGTTDNIAALAEFLRAHPDYQYVLDPVLVANSGGSLGDQATLVKAFVELIPLATLITPNTVELRALTGVTDLD-----QATQKLFEMGAKAVLVKGGHED--TPDFIKNSLYI-DGELAASSTCP-----------CSLASFIAGRLALGDSLKIAVQHAETWLFGV----------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4YL5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -186290 for 1991 contacts (-93.6/contact) +
2D Compatibility (PS) -24064 + (NN) -6105 + (LL) 1424
1D Compatibility (HY) -8800 + (ID) 4150
Total energy: -227985.0 ( -114.51 by residue)
QMean score : 0.614
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