Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEG---KLTGYDVEVARELAKELGVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYS---YSGTIMLVRKDENRIKDIRDIKGLKAANTLSSTYGEIAFKY-DAQIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNSPFKIAWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP
4YMX Chain:A ((37-258))
------------------------------GVIVMGTSADFPPFEFHKVEGGKDEIVGFDIDIANAIAKKLGVKLEIKDMDFKGLIPALQAGRVDMVIAGMTPTAERK-----KSVDFSDLYYDSRQVVVVKNDSPISKFDDLKVKTIAVQIGTTSEEAAKKIPNVKLKQLNRVSDEFMDLQNGRCDAIVVEDTVAKAYLKEYKDMKILYMDEINNVENGSAVAVAKGNKSLLDVVNEVIKELKQSGEYDKLVDKWFKQ-----
General information:
TITO was launched using:
RESULT:
Template:
4YMX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -94667 for 1772 contacts (-53.4/contact) +
2D Compatibility (PS) -23486 + (NN) -11619 + (LL) 2976
1D Compatibility (HY) -14800 + (ID) 2650
Total energy: -144246.0 ( -81.40 by residue)
QMean score : 0.561
(partial model without unconserved sides chains):
PDB file :
Tito_4YMX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMX-query.scw
PDB file :
Tito_Scwrl_4YMX.pdb
: