Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIELDINASDKSLSHRAVIFSLLAQKPCFVRNFLMGEDCLSSLEIAQNLGAKVENTAKNSFKI--TPPTTIKEPNKILNCNNSGTSMRLYSGLLSAQKGLFVLSGDNSLNARPMKRIIEPLKAFGAKILGREDNHFAPLAIVGGPLKA-CDYESPIASAQVKSAFILSALQAQGISAYKESELSRNHTEIMLKSLGANIQ---NQDGVLKISPLEK--PLESFDFTIANDPSSAFFLALACAITPKSRLLLKNVLLNPTRIEAFEVLKKMGAHIEYVIQSK--DLEVIGDIYIEHAPLKAISIDQNIA-SLIDEIPALSIAMLFAKGKSMVRNAKDLRAKESDRIKAVVSNFKALGIECEEFEDGFYIEGLGDASQLKQHFSKIKPPIIKSFNDHRIAMSFAVLTLAL--PLEIDNLECANISFPTFQLWLNLFKKRSLNGN |
| 2GGD Chain:A ((26-436)) | --------GDKSISHRSFMFGGLASGETRITGLLEGEDVINTGKAMQAMGARIRKEG-DTWIIDGVGNGGLLAPEAPLDFGNAGTGCRLTMGLVGVYDFDSTFIGDASLTKRPMGRVLNPLREMGVQVK-SEDGDRLPVTLRGPKTPTPITYRVPMASAQVKSAVLLAGLNTPGITTVIEPIMTRDHTEKMLQGFGANLTVETDADGVRTIR-LEGRGKLTGQVIDVPGDPSSTAFPLVAALLVPGSDVTILNVLMNPTRTGLILTLQEMGADIE-VINPRLAGGEDVADLRVRSSTLKGVTVPEDRAPSMIDEYPILAVAAAFAEGATVMNGLEELRVKESDRLSAVANGLKLNGVDCDEGETSLVVRGRPDGKGLGNASGA----AVATHLDHRIAMSFLVMGLVSENPVTVDDATMIATSFPEFMDLMAGLGAKIELS- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GGD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -257307 for 3701 contacts (-69.5/contact) +
2D Compatibility (PS) -42087 + (NN) -9800 + (LL) 836
1D Compatibility (HY) -24800 + (ID) 7150
Total energy: -340308.0 ( -91.95 by residue)
QMean score : 0.425
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