Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKRSSVFSFLVAFLLVVGCSHKMDNKTVAGDVSTKAVQTAPVTTEPAPEKEEPKQEPAPVVEEKPAIESGTIIASIYFDFDKYEIKESDQETLDEIVQKAKENHMQ-VLLEGNTDEFGSSEYNQALGVKRTLSVKNALVIKGVEKDMIKTISFGESKPKCVQ----------------KTRE----CYRENRRVDVKLVK
1R1M Chain:A ((9-139))
-------------------------------------------------------------------ETISLSAKTLFGFDKDSLRAEAQDNLKVLAQRLSRTNIQSVRVEGHTDFMGSDKYNQALSERRAYVVANNLVSNGVPVSRISAVGLGESQAQMTQVCEAEVAKLGAKVSKAKKREALIACIEPDRRVDVKIRS
General information:
TITO was launched using:
RESULT:
Template:
1R1M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -12564 for 796 contacts (-15.8/contact) +
2D Compatibility (PS) -11639 + (NN) -3799 + (LL) 4652
1D Compatibility (HY) -7200 + (ID) 2200
Total energy: -32750.0 ( -41.14 by residue)
QMean score : 0.373
(partial model without unconserved sides chains):
PDB file :
Tito_1R1M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1R1M-query.scw
PDB file :
Tito_Scwrl_1R1M.pdb
: