Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFSVLTLFPQLILPYFEDSILKRALEKNLFELEVLNLRDFSANKYQKADHTLIGGGAGQILDPEMIENALHSVKNPKH----TIFLSAVGKPFKQIDAMRLAQKKHVVLVCGRYEGFDERSIELGADEVFCIGDFILTGGELGALCLIDSIARHIQGVLGNAQSLENESFENNYLETPNFANAVFKSKEINKIPAPLEYSKGNHAKIKQLKLDLSKLRTKFYRLDLFKQHKS
1UAJ Chain:A ((1-225))
MWIGVISLFPEMFKAITEFGVTGRAVKHNLLKVECWNPRDFTFDKHKTVDDRPYGGGPGMLMMVQPLRDAIHTAKAAAGEGAKVIYLSPQGRKLDQGGVTELAQNQKLILVCGRYEGIDERLIQTEIDEEWSIGDYVLTGGELPAMTLIDAVARFIPGVLG-------------LLDCPHYT----RPEVLEGLTVPPVLMSGHHEEIRKWRLKQSLQRTWLRRPELLEGLAL
General information:
TITO was launched using:
RESULT:
Template:
1UAJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -129007 for 1491 contacts (-86.5/contact) +
2D Compatibility (PS) -22480 + (NN) -8673 + (LL) 896
1D Compatibility (HY) -16000 + (ID) 3900
Total energy: -179164.0 ( -120.16 by residue)
QMean score : 0.447
(partial model without unconserved sides chains):
PDB file :
Tito_1UAJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UAJ-query.scw
PDB file :
Tito_Scwrl_1UAJ.pdb
: