Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGKIGIFFGTDSGNAEAIAEKISKAIGNAEVI--DVAKASKEQFNGFTKVILVAPTAGAGDLQTDWEDFLGTLEASDFANKTIGLVGLGDQDTYSETFAEGIFHIYEK--AKAGKVVGQTPTDGYHFEASKAVEGGKFVGLVIDEDNQDDLTDERIAKWVEQVKGSFA
1FTG Chain:A ((2-166))
--KIGLFYGTQTGKTESVAEIIRDEFGNDVVTLHDVSQAEVTDLNDYQYLIIGCPTWNIGELQSDWEGLYSELDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGYWSTDGYDFNDSKALRNGKFVGLALDEDNQSDLTDDRIKSWVAQLKSEFG
General information:
TITO was launched using:
RESULT:
Template:
1FTG.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -82274 for 1347 contacts (-61.1/contact) +
2D Compatibility (PS) -17645 + (NN) -10874 + (LL) 36
1D Compatibility (HY) -13600 + (ID) 3700
Total energy: -128057.0 ( -95.07 by residue)
QMean score : 0.549
(partial model without unconserved sides chains):
PDB file :
Tito_1FTG.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FTG-query.scw
PDB file :
Tito_Scwrl_1FTG.pdb
: