Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKKVFKRLEKLFSKIQNDKVYGVEHGVEVVKSLASAKFDETVEVALRLGVDPRHADQMVRGAVVLLHGTGKKVRVAVFAKDIKQDEAKNAGADVVGGDDLAEEIKNGRIDFDMVIATPDMMAVVG-KVGRILGPKGLMPNPKTGTVTMDIAKAVTNAKSGQVNFRVDKKGNVHAPIGKASFPEEKIKENMLELVKTINRLKPSSAKGKYIRNAALSLTMSPSVNLDAQELMDIK
3UMY Chain:A ((5-227))
------KRYRALLEKVDPNKIYTIDEAAHLVKELATAKFDETVEVHAKLGIDPRRSDQNVRGTVSLPHGLGKQVRVLAIAKGEKIKEAEEAGADYVGGEEIIQKILDGWMDFDAVVATPDVMGAVGSKLGRILGPRGLLPNPKAGTVGFNIGEIIREIKAGRIEFRNDKTGAIHAPVGKASFPPEKLADNIRAFIRALEAHKPEGAKGTFLRSVYVTTAMGPSVRINPHS-----
General information:
TITO was launched using:
RESULT:
Template:
3UMY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -119228 for 1810 contacts (-65.9/contact) +
2D Compatibility (PS) -24119 + (NN) -11612 + (LL) 1420
1D Compatibility (HY) -17600 + (ID) 5450
Total energy: -176589.0 ( -97.56 by residue)
QMean score : 0.531
(partial model without unconserved sides chains):
PDB file :
Tito_3UMY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3UMY-query.scw
PDB file :
Tito_Scwrl_3UMY.pdb
: