Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKTEMKSFLKLFAQPLLVVLAFMLLYALAHAVLGFYVKKDSAPMSPNVEKSETERQNSTFS-PKEEANATTTATEQNPTKDTVPP--LDTATQKQEIKQEIKQEIKQ---------EIKQEIKQEIKQEIKQETKQEQEKENKPKQNSVSPVQNDQKTPTTPLMGKKPLEYKVAVSGVNVRAFPSTKGKIIGSLIKNKSVKVLEIQNDWAEIEFSHETKGYVFLKLLKKAE |
4E4R Chain:A ((9-103)) | ----------------------------------------------NVLKDKLSGKNVKIVLPEGEDERVLTAATQLQATDYVTPIVLGDETKVQSLAQKLNLDISNIELINPATSELKAELVQSFVERRKGKTTEEQAQELLNNVNYFGTMLVYAGKADGLVSGAAHSTGDTVRPALQIIKTKPGVSRTSGIFFMIKGDEQYIFGDCAINPELDSQGLAEIAVESAKSAL |
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General information:
TITO was launched using:
| RESULT:
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Template: 4E4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 49390 for 432 contacts (114.3/contact) +
2D Compatibility (PS) -8597 + (NN) -970 + (LL) 4648
1D Compatibility (HY) -3600 + (ID) 1300
Total energy: 39571.0 ( 91.60 by residue)
QMean score : 0.319
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