Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQKIGIYPGTFDPVTNGHIDIIHRSSELFEKLIVAVAHSSAKNPMFSLDERLKMMQLATKSFKNVECVAFEGLLADLAKEYHCKVLVRGLRVVSDFEYELQMGYANKSLNHELETLYFMPTLQNAFISSSIVRSIIAHKGDASHLVPKEIYPFISKV
3F3M Chain:A ((5-153))
---IAVIPGSFDPITYGHLDIIERSTDRFDEIHVCVLK-----GTFSLEERMDLIEQSVKHLPNVKVHQFSGLLVDYCEQVGAKTIIRGLRAVSDFEYELRLTSMNKKLNNEIETLYMMSSTNYSFISSSIVKEVAAYRADISEFVP----PYVEKA
General information:
TITO was launched using:
RESULT:
Template:
3F3M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -117522 for 1099 contacts (-106.9/contact) +
2D Compatibility (PS) -15260 + (NN) -3710 + (LL) 928
1D Compatibility (HY) -14800 + (ID) 3350
Total energy: -153714.0 ( -139.87 by residue)
QMean score : 0.498
(partial model without unconserved sides chains):
PDB file :
Tito_3F3M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3F3M-query.scw
PDB file :
Tito_Scwrl_3F3M.pdb
: