Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VSKVLKSLLLTALLGVTGLISGCGDLTVLNPKGPVAKGQSDLIIYSIIFMLVIV--LTIFVLFTIMLVKYRERKDISNYEPDMHGSKKLEIFWTLIPVAIVIALAIPTVKTIYAGEEAPKVTSHKDPIIIYATSADWKWIFSYPDESIETVNYV------------------------------NIPTDRPV--------LFKLTSADTMTSFWVPQLGGQKYAMSGMTMNLYLQADEVGTYKGRNANFNGEGFADQRFDVVAQSEKDFKKWAKETKASSPVITQDIYDRLLIPGSSKKKTYSGTHLAFVDVAADPEYVFYAYKRFGYEMTNPHNPNTKSTISDEPMLPVRPVTVTNPQFERHDMKPQIIKNGEGYHEDKHREDEMKKMEEDIQTNEFNKKESDDAGK |
2GSM Chain:B ((35-256)) | ------------------------------------------------FILVIIAAITIFVTLLILYAVWRFHEKRNKVPARFTHNSPLEIAWTIVPIVILVAIGAFSLPVLFNQQEIPEAD-----VTVKVTGYQWYWGYEYPDEEISFESYMIGSPATGGDNRMSPEVEQQLIEAGYSRDEFLLATDTAMVVPVNKTVVVQVTGADVIHSWTVPAFGVKQDAVPGRLAQLWFRAEREGIFFGQCSELCGISHAYMPITVKVVSEEAYAAWLEQ------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GSM.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -57357 for 1109 contacts (-51.7/contact) +
2D Compatibility (PS) -19712 + (NN) -9189 + (LL) 9384
1D Compatibility (HY) -16400 + (ID) 2500
Total energy: -95774.0 ( -86.36 by residue)
QMean score : 0.397
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