Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGQLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQQNYKEVAVAISNFEPVTMFVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVDDKGDMRGVDWGFNAWGGLLDGLYFPWDKDNQIAKKVCELERIDYYSQKDFILEGCSIHVDGEGTLVTTEECLLSEGRNPNLTKIEIEQTLKKYF--HAQKVIWLKHGFYLDETNGHVDNIFNFVAPGEVVLSWTDNKSDPQYEISRECYDILANKTDAKGRTFIIHKLHCPDPVLITQTESEGVEAINGTFPRQAGDRLAASYVNYYTANGAIIFPLFDDPK--DKDAQELLEKLYPDRKIVGIKAREIL--LGGGNIHCITQHLPDKSTIRE |
| 5AK8 Chain:A ((35-313)) | ----------------------------------------KELAKNDKVITIVASESQKNTVIT---QYTQSGVNLSNCDFIIAKT-DSYWTRDYTGWFAMYDTNKVGLVDFIYNR----------PRPNDDEFPKYEAQYLGIEMFGMK-LKQTGGNYMTDGYGSAVQSH---IAYTENSSLSQAQVNQKMKDYLGITHHDVVQDPNGEYIN----HVDCWGKYLAPNKILIRKVPD-NHPQHQALEDMAAYFAAQTCAWGTKYEVYR------ALATNEQ---------------------PYTNSLILNNRVFVPV-NGPASVDNDALNVYKTAMPGYEIIGVKGASGTPWLGTDALHARTHEVADK----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 5AK8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -66236 for 2161 contacts (-30.7/contact) +
2D Compatibility (PS) -29746 + (NN) -13799 + (LL) 3004
1D Compatibility (HY) -10400 + (ID) 3400
Total energy: -120577.0 ( -55.80 by residue)
QMean score : 0.402
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