Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDFITYIIDFILHIDQH-LVEIINNFGIWTY-IILFLIVFIETGLVVFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPEDSWFGK-------LINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTF----------APFVAGASRMNYRYFLNYNILGATVWVLLC-TLAGYFFG-NFP-----IVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSAE-------
4PX7 Chain:A ((1-258))
GRSIARRTAVGAALLLVMPVAVWISGWRWQPGSWLLKAAFWVTETVTQPWGVITHLILFGWFLWCLRFRIKAAFVLFAILAAAILVGQGVKSWIKDKVQEPRPFVIWLEKTHHMPVDKFYTLKRAERGNLVKEQLAEPQYLRSHWQKETGFAFPSGHTMFAASWALLAVGLLWPRRRTLTIAILLVWATGVMG-SRLLLGMHWPRDLVVATLISWALVAVATWLAQRICGPLTPPEENREIAQREQESLEHH
General information:
TITO was launched using:
RESULT:
Template:
4PX7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145878 for 1454 contacts (-100.3/contact) +
2D Compatibility (PS) -21942 + (NN) -3965 + (LL) 176
1D Compatibility (HY) -3200 + (ID) 1750
Total energy: -176559.0 ( -121.43 by residue)
QMean score : 0.154
(partial model without unconserved sides chains):
PDB file :
Tito_4PX7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4PX7-query.scw
PDB file :
Tito_Scwrl_4PX7.pdb
: