Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAGGRRGGRRRKKVCYFTSNGITHIDYKDVELLKKFVSERGKILPRRVTGTSAKYQRKLTVAIKRSRQMALLPFVAEEK
2UXD Chain:R ((33-82))
-------------------------DYRNVEVLKRFLSETGKILPRRRTGLSAKEQRILAKTIKRARILGLLPFT----
General information:
TITO was launched using:
RESULT:
Template:
2UXD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -9750 for 288 contacts (-33.9/contact) +
2D Compatibility (PS) -5324 + (NN) -3054 + (LL) 1456
1D Compatibility (HY) -4000 + (ID) 1550
Total energy: -22222.0 ( -77.16 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2UXD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2UXD-query.scw
PDB file :
Tito_Scwrl_2UXD.pdb
: