Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIDLEQIYILDFTMGLRFHPLIIRKNLPLLYVAFIFLIWIQG-----------VVMAGLPGDFDTTELDVLLAAIPALPLLILYPKKMAMKFQNVQYLLYVCFN
4DNR Chain:A ((905-965))
---------------------LLIISSVPFALVGGIWLLWWMGFHLSVATGTGFIALAGVAAEFGVVMLMYLRHAIEAVPSL-----------------------
General information:
TITO was launched using:
RESULT:
Template:
4DNR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -17242 for 232 contacts (-74.3/contact) +
2D Compatibility (PS) -5101 + (NN) -1819 + (LL) 4336
1D Compatibility (HY) -7200 + (ID) 900
Total energy: -27926.0 ( -120.37 by residue)
QMean score : -0.018
(partial model without unconserved sides chains):
PDB file :
Tito_4DNR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DNR-query.scw
PDB file :
Tito_Scwrl_4DNR.pdb
: