Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKLKIVSPMGQFFEGEVEGFVINTKEGQQTVLEEHIDCLSFFDYSEISILD-AVASDPIFVALGYLHLVQNEANIMAQFASA----DAEQAERIFERLNKRKQTESRRSNDK
1AQT Chain:A ((4-108))
YHLDVVSAEQQMFSGLVEKIQVTGSEGELGIYPGHAPLLTAIKPGMIRIVKQHGHEEFIYLSGGILEVQPGNVTVLADTAIRGQDLDEARAMEAKRKAEEHISSS-------
General information:
TITO was launched using:
RESULT:
Template:
1AQT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65101 for 639 contacts (-101.9/contact) +
2D Compatibility (PS) -10801 + (NN) -995 + (LL) 52
1D Compatibility (HY) -5200 + (ID) 1050
Total energy: -83095.0 ( -130.04 by residue)
QMean score : 0.417
(partial model without unconserved sides chains):
PDB file :
Tito_1AQT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1AQT-query.scw
PDB file :
Tito_Scwrl_1AQT.pdb
: