Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTYLNNDFEDLMKNRRSIREYDETVKISQEEMKAILEDAVTAPSSVNMQPWRFVVVESDAGKEKLSSLVRFNTRQNESSSAMILVFGDLQNFENGEKIYGESVERGLMPAEVKEQQMAKLSQYFASIPRSEAERVVLIDGGIVAMQLMLVARAHGYDTNPIGGFERTEVAEAFNMDPERYVPVMIVSIGKAKNSGYQSYRLPITDVTTFA
1NOX Chain:A ((16-204))
-------------KRRSIRRYRKD-PVPEGLLREILEAALRAPSAWNLQPWRIVVVRDPATKRALREAA-FGQAHVEEAPVVLVLYADL---EDALAHLDEVIHPGVQ-GERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLPSRAAIPAL-VALGYPAEEGYPSHRLPLERVVLW-
General information:
TITO was launched using:
RESULT:
Template:
1NOX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -62572 for 1357 contacts (-46.1/contact) +
2D Compatibility (PS) -21041 + (NN) -13530 + (LL) 1572
1D Compatibility (HY) -14400 + (ID) 2750
Total energy: -112721.0 ( -83.07 by residue)
QMean score : 0.584
(partial model without unconserved sides chains):
PDB file :
Tito_1NOX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NOX-query.scw
PDB file :
Tito_Scwrl_1NOX.pdb
: