Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGLMKFQLFIQPKLDVLQGNIVEYEILLR-DDSAVPRFPLSELEAVLADEELYLAFSEWFSEAFLDVLKKYPNDRFA-------INIAPQQLFYIETLHWLDKLKSESH----RITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVMSYLPY-IIEIKFSLIHFKNIPLE-DLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLESHGVSIFQGYLVNKPFPV
3N3T Chain:A ((42-266))
-------LHYQPIVELASGRIVGGEALVRWEDPERGLVMPSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRAADDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVM--------LVMTDEVRTCLDALRA---RGVRLALDDFGTGYSSLS-YLSQLPFHGLKIDQSFV--RKIPAHPSETQIVTTILALARGLGMEVVAEGIETAQQYAFLRDRGCEFGQGNLMSTP---
General information:
TITO was launched using:
RESULT:
Template:
3N3T.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -136733 for 1608 contacts (-85.0/contact) +
2D Compatibility (PS) -22624 + (NN) -13750 + (LL) 1328
1D Compatibility (HY) -13200 + (ID) 2900
Total energy: -187879.0 ( -116.84 by residue)
QMean score : 0.617
(partial model without unconserved sides chains):
PDB file :
Tito_3N3T.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3N3T-query.scw
PDB file :
Tito_Scwrl_3N3T.pdb
: