Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYEKLVNKYQDEVTIREEKMPYKLPGLYLNGMIFISKDQSSIEKGCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREYFEVAEFLEVTEEFLRHTVSHY-----AEKYGPMYDYGGYFINFGNSIDVYKKF
3V4O Chain:A ((38-99))
--------------------------------------------------------------------------------------PLVDVYELTNLLRQLDFKVVSLLDLTEYEMRNAVDEFLLLLDKGVYGLLYYAGHGYENFGNS-------
General information:
TITO was launched using:
RESULT:
Template:
3V4O.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -21031 for 254 contacts (-82.8/contact) +
2D Compatibility (PS) -5921 + (NN) -1432 + (LL) 7800
1D Compatibility (HY) -4000 + (ID) 1000
Total energy: -25584.0 ( -100.72 by residue)
QMean score : 0.078
(partial model without unconserved sides chains):
PDB file :
Tito_3V4O.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V4O-query.scw
PDB file :
Tito_Scwrl_3V4O.pdb
: