Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VDSEMNHDFDLEKQFAFFVVNFRMSKHDFEELTEVEKNFIMKEWENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISENEAKEGKAWIDRIYGANGLRRPKNKEERRNVNGGF
2GGD Chain:A ((55-102))
-------------------------------------------------------------------------------------DVINTGKAMQAMGARIRKEGDTWIIDGVGNGGLLAPEAPLDFGNAGTG-
General information:
TITO was launched using:
RESULT:
Template:
2GGD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 11449 for 238 contacts (48.1/contact) +
2D Compatibility (PS) -4984 + (NN) -761 + (LL) 7368
1D Compatibility (HY) -1200 + (ID) 850
Total energy: 11022.0 ( 46.31 by residue)
QMean score : 0.273
(partial model without unconserved sides chains):
PDB file :
Tito_2GGD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2GGD-query.scw
PDB file :
Tito_Scwrl_2GGD.pdb
: