Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VKFDLENGYVVKADGEMLVGGKFVVFKDSMKNWEPPYENKKLSESEVQEIIQQVKQSTNENTVQISFE
1ZDA Chain:A ((20-37))
--------------------------------------DPNLNEEQRNAKIKSIRD------------
General information:
TITO was launched using:
RESULT:
Template:
1ZDA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 2763 for 75 contacts (36.8/contact) +
2D Compatibility (PS) -1957 + (NN) -407 + (LL) 2896
1D Compatibility (HY) -400 + (ID) 150
Total energy: 2745.0 ( 36.60 by residue)
QMean score : 0.759
(partial model without unconserved sides chains):
PDB file :
Tito_1ZDA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1ZDA-query.scw
PDB file :
Tito_Scwrl_1ZDA.pdb
: