Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LDQKIKDIYHIDDSFSIDNEKYNKWLKSLLNKTRGEITENDVYTML---LQQELEDLAIEKAIEFIKIDPLAGEMWDGQFLEQLAGISVDKLVAYKEELQKLIPYMDNQINEILWDFETEKEEFLFRYAKFKDKVANL
3AJB Chain:A ((263-361))
----------------------------LLNETRDMLESPDFSTVLNTCLNRGFSRL-LDNMAEFFR--P------------SLSSVSL--------PLAKIIPIVNGQIHSVCSETPSHFVQDLLTMEQVKDFAANV
General information:
TITO was launched using:
RESULT:
Template:
3AJB.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 9749 for 426 contacts (22.9/contact) +
2D Compatibility (PS) -8863 + (NN) -1925 + (LL) 3536
1D Compatibility (HY) -8800 + (ID) 1300
Total energy: -7603.0 ( -17.85 by residue)
QMean score : 0.227
(partial model without unconserved sides chains):
PDB file :
Tito_3AJB.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3AJB-query.scw
PDB file :
Tito_Scwrl_3AJB.pdb
: