Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LYKNYLQRTLVLLLCFILYFFTFPLGGKAYSLNNWNKPIKNSVTTKQWMSALPDTTNLAALSIPGTHDTMSYNGDITWTLTKPL----AQTQTMSLYQQLEAGIRYIDIRAK---DNL-NIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYRIQPLINIYKDYFYTTPRTDT-----SNKIPTLKDVRGKILLLSE-NHTKKPLVINSRKFGMQF------------GAPNQVIQDDYNGPSVK--TKFKEIVQTAYQASKADNKL--FLNHISATSLTFTPRQYAAALNNKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN |
| 4F2U Chain:A ((5-282)) | -----------------------------------------SKSPENWMSKLDDGKHLTEINIPGSHDSGSF------TLKDPVKSVWAKTQDKDYLTQMKSGVRFFDIRGRASADNMISVHHGMVYLHHELGKFLDDAKYYLSAYPNETIVMSMKKDYDSDSKV---TKTFEEIFREYYYNNPQYQNLFYTGSNANPTLKETKGKIVLFNRMGGTYIKSGYGADTSGIQWADNATFETKINNGSLNLKVQDEYKDYYDKKVEAVKNLLAKAKTDSNKDNVYVNFLSVASGGSAFNSTYYYASYINPEIAKTI--KANGKAR-TGWLIVDY---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4F2U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -81000 for 1885 contacts (-43.0/contact) +
2D Compatibility (PS) -26068 + (NN) -7704 + (LL) 3904
1D Compatibility (HY) -16000 + (ID) 4050
Total energy: -130918.0 ( -69.45 by residue)
QMean score : 0.508
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