Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVSGAHQGVAAQVAAY-QYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLT-QTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTM-DVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKRFPLEK
3NK7 Chain:A ((42-272))
--------------PLMECIRAGVQFIEVYGSSGTP--LDPALLDLCRQREIPVRLIDVSIVNQL------AKVFGIARVPRPARLADI---AERGGDV---VVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNFAVRR
General information:
TITO was launched using:
RESULT:
Template:
3NK7.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -159229 for 1779 contacts (-89.5/contact) +
2D Compatibility (PS) -24271 + (NN) -10546 + (LL) 1656
1D Compatibility (HY) -16400 + (ID) 2850
Total energy: -211640.0 ( -118.97 by residue)
QMean score : 0.537
(partial model without unconserved sides chains):
PDB file :
Tito_3NK7.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NK7-query.scw
PDB file :
Tito_Scwrl_3NK7.pdb
: