Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKRNKTALRILVTLAVVLAITFWVGMSSKEVQAAVIEHPTPINEIFTDPVLTDNVKTLLGKADVTDEVTQTDLDSVTHLSAKSAGITTIEGLQYLTNLSELELIDNQVTDLNPLTNLTKITELRLSGNPLKDVSALAGLKNLKTMDLIYTDITDVTPLAGLSNLQVLNLDINQITDITPLAGLS----------------------NLQFLSFGSTQVSDLTPLANLSKLTTLNAMNSKVSDVSPLTGLSNLTEVYLEENQISDVSPLAKLPNLSIVTLTNQTITNQPVFYQNKPIVPNVVTGLSGELIAPDTISDNGTYTSPNLTWDLNSFINSVSYTFNQSVTFKNTTAPFSGTVTQPLTEVYAVVFDVDGEQTSAMVGVNELINEPTAPAKEGYIFDGWYDAKTDGNKWDFGIDKMPASDITLYAKFTENEEPNASSPINVEPNDNNSDNAEPNASSSNNVQENGTNEGINNLNSSGEDKVNIKLPITGDKLNVLPIFVGAVLIGIGLVLFRKKRQTK |
1O6V Chain:A ((167-464)) | ---------------------------------------------------------------VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPL---------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1O6V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -175689 for 2071 contacts (-84.8/contact) +
2D Compatibility (PS) -28755 + (NN) -3453 + (LL) 12152
1D Compatibility (HY) -26400 + (ID) 6350
Total energy: -228495.0 ( -110.33 by residue)
QMean score : 0.441
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