Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVAIISQDGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKED-NSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN
2VLJ Chain:D ((87-154))
------------------------------------------------------------------YLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQLR-DSKSSDKSVCL----FTDFDSQTNVSQSKDSDVYI--
General information:
TITO was launched using:
RESULT:
Template:
2VLJ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6161 for 249 contacts (-24.7/contact) +
2D Compatibility (PS) -6775 + (NN) 507 + (LL) 5804
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -12025.0 ( -48.29 by residue)
QMean score : 0.339
(partial model without unconserved sides chains):
PDB file :
Tito_2VLJ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VLJ-query.scw
PDB file :
Tito_Scwrl_2VLJ.pdb
: