Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEVKDILTKELVVFDLEATTKETAIEEMAEMLDERGILADKATYVQAVLEREAHSTTGIGN---NIAIPHGKSESVTKSAIVFARTKEMIEWESL----DDEPVNMIFLLAITDS-DKTDGHLKILAEIATKLMDDDIVESLKNTRDKEEVIRILNGGVVEI
4M8Q Chain:C ((26-150))
------------------VSQNDIIKALASPLINDGMVV--SDFADHVITREQNFPTGLPVEPVGVAIPHTDSKYVRQNAISVGILAEPVNFEDAGGEPDPVPVRVVFMLALGNWFDITN----VLWWIMDVIQDEDFMQQLLVMNDDE-------------
General information:
TITO was launched using:
RESULT:
Template:
4M8Q.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -57102 for 845 contacts (-67.6/contact) +
2D Compatibility (PS) -13023 + (NN) -8341 + (LL) 3480
1D Compatibility (HY) -9600 + (ID) 1700
Total energy: -86286.0 ( -102.11 by residue)
QMean score : 0.522
(partial model without unconserved sides chains):
PDB file :
Tito_4M8Q.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M8Q-query.scw
PDB file :
Tito_Scwrl_4M8Q.pdb
: