Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIEQDLQNRLVDQEILHGSDLLDEIHEVKQNNEQLIIELN---TKYHTKKEVTKYLSDITGKPVDPSVDVSLPFYSDFGKHITFGKNIFINLNVTFVDLGGITIEDNVLIGPGARLVTVNHLVSPKKR-RGLRVA-PICVKKNAWIGANTTILSGVTIGENAIVAADATVTKDVPPNVIVAGSPAKQIRKIIEE
1OCX Chain:A ((4-182))
------KEKMIAGELYRSAD--ETLSRDRLRARQLIHRYNHSLAEEHTLRQ--QILADLFGQVTEAYIEPT--FRCDYGYNIFLGNNFFANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPIDPVARNSGAELGKPVTIGNNVWIGGRAVINPGVTIGDNVVVASGAVVTKDVPDNVVVGGNPARIIKKL---
General information:
TITO was launched using:
RESULT:
Template:
1OCX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110076 for 1358 contacts (-81.1/contact) +
2D Compatibility (PS) -19149 + (NN) -4327 + (LL) 1780
1D Compatibility (HY) -14400 + (ID) 3000
Total energy: -149172.0 ( -109.85 by residue)
QMean score : 0.630
(partial model without unconserved sides chains):
PDB file :
Tito_1OCX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1OCX-query.scw
PDB file :
Tito_Scwrl_1OCX.pdb
: