Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MATQKNLVDLATKAYIYGFPFIFNTQQIERYVTVG-IGGTKQVPFNNFTHASRLAEPSDKFVSVNNDTIYSNAPIDVSA-GPVVLSVPDTSGRYYVLQFVDAWSNNFAY---VGKRATGTSAGKFLLTPPNWNGD--VPADMIEIKFPTNIGIIIGRLACDGEADLPTVRELQEQLKITPLNEGKEVDGFPEYDR--------SLGKELAFFEQLRVYMAQFP--PAERDLVKQESFAPIGLMEKGVSPYSNPSEELKNALIEGAKAGLANIKKATTNF------KSENGWGLTQH--LFDYNADFFEIGTKKSLDWVIEDREEAYIIRA------VSAITALWG-NHGYEAVYLMTWTDTDGNALNGKNKYTLELNPIPPVDSFWSITMYDLPEYFLCENPINRYSIGDRTPGIQYNDDGGITIVVSKDEPTDPKERANWLPAPDA-EFRPMFRLYNPQQPLVDGSYHFPGFEKK |
| 2P3Y Chain:A ((49-481)) | --LNEMDFQRATQAYLWGIPASSIMEWLNVSRNDFKFEEGQMGFFNTLKQ------KQ-GIITANFTTPYVIGTWNLEKTGPLIINLPEAKM---AGMMLDVHQRVLSDLSLLGPDK-G-KGGKYLIVPPGEKYKDLNPKGYYVIRPKTNVVYGGIRILEPDV-D-RVVKQVVPNITTQPYADGKLGRKI-PVAQVPEIDWTHIPKDGLEYWKTIHQIIQENPVEERDRFVMAQ--LKFLGIE-KGKPF--NPTEEQKKILLEASKVGRAMAQSNDYTKRFTQPYWKGTNWKDAISVSLDQR-----------------SENYDELDERAAWFYEAITVSRGMKSTIPGFGQRYLVTYQDSDGNWLSGEHTYKLHVPANVPASNFWSTTVYDENNRLMIINDAGSPDISSRKN-LKVNSDGSIDVYYGPKPVK--GYENNWVQTNPGEGWFTYFRFYGPTEKMFDKSWTMGDIEL- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2P3Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 77638 for 2951 contacts (26.3/contact) +
2D Compatibility (PS) -39065 + (NN) 1192 + (LL) 2724
1D Compatibility (HY) 22000 + (ID) 1100
Total energy: 63389.0 ( 21.48 by residue)
QMean score : 0.015
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