Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIVIIDYDTGNTKSISKALDFIGLQNKI---SSDATEISQADGVILPGVGAYPEAMKELTRRGLNKTLKEIAAGGKPILGVCLGMQLLLESSNEHSFTNGLGLIPGHVEKLPEDPEFAVPHMGWNQLQIKRATPLTKQLDGEYVYYV--HSYYANCPEEYIIATSGYSIEVPGMINKGN-IYGAQFHPE-KSGQIGLEILKGFKEVTYSCKSSQQ
2A9V Chain:A ((16-207))
-IYVVDNGGQWTHREWRVLRELGVDTKIVPNDIDSSELDGLDGLVLSG-GA-PNIDEELDK--LGSVGKYIDDHNYPILGICVGAQFI-------ALHFGASVVKA------KHPEF-----GKTKVSVMHSENIFGGLPSEITVWENHNDEIINLPDDFTLAASSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDIFRNFIGICASYREIQK
General information:
TITO was launched using:
RESULT:
Template:
2A9V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -83535 for 1530 contacts (-54.6/contact) +
2D Compatibility (PS) -19788 + (NN) -6671 + (LL) 1600
1D Compatibility (HY) -14000 + (ID) 2750
Total energy: -125144.0 ( -81.79 by residue)
QMean score : 0.442
(partial model without unconserved sides chains):
PDB file :
Tito_2A9V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2A9V-query.scw
PDB file :
Tito_Scwrl_2A9V.pdb
: