Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAKYEENFKKSLVALY--RRGKTKHSICQEFNVPHSTFGKWIKKFNNEENIESNEILNILQAQELKKQRVLLEEELSILTEAIAVFENPLPKNK
3U9M Chain:A ((19-100))
-----------KQLVGLYCDKLSKTNFSNNNDFRALLQSLYATFKEFKMHEQIENEYIIGLLQQRSQTIYNVHSDNKLS---EMLSLFEKGLKNVK
General information:
TITO was launched using:
RESULT:
Template:
3U9M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 5620 for 416 contacts (13.5/contact) +
2D Compatibility (PS) -8035 + (NN) -1086 + (LL) 1472
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -8079.0 ( -19.42 by residue)
QMean score : 0.347
(partial model without unconserved sides chains):
PDB file :
Tito_3U9M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3U9M-query.scw
PDB file :
Tito_Scwrl_3U9M.pdb
: