Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEYFLSLLKIIVLLAVLAGISYFLV-KKNKQANRTRKSENDLIKLKDTLLISHQLRAVLLEADGEKVLAIISNNDIRTVSLKGKNDQNEKLFRELLLKEETKENA
2RDD Chain:B ((7-27))
-----------LMLVVFGLIFYFMILRPQQKR-------------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2RDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2207 for 71 contacts (-31.1/contact) +
2D Compatibility (PS) -2050 + (NN) -1657 + (LL) 7104
1D Compatibility (HY) -4000 + (ID) 250
Total energy: -3060.0 ( -43.10 by residue)
QMean score : 0.486
(partial model without unconserved sides chains):
PDB file :
Tito_2RDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2RDD-query.scw
PDB file :
Tito_Scwrl_2RDD.pdb
: