Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSDKLSQEQIDALLSQMSEGKVVDESTEIGDF-----GRFHPYDFHKPEKFGAEHLESLKT-IASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSYIFCIIDLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKLSERRLLSVFEELTLKSILEKFCEALKDSFKSVHPISPEIVNIETNPALLRVTSPNDMMALVSVDIKSEFWISTMRIGVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEARIRVGEIKTTWKELNKLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVKFMRHTGRTEQER |
3VH3 Chain:A ((227-323)) | MASSLAVELMTSLLQTKYSGS---ETTVLGDIPHQIRGFLHNFSILKLETPAYEHCPACSPKVIEAFTDLGWEFVKKALEHPLYLEEI--SGLSVIKQEVER------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VH3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) 7829 for 467 contacts (16.8/contact) +
2D Compatibility (PS) -9182 + (NN) 2470 + (LL) 18884
1D Compatibility (HY) -7200 + (ID) 1300
Total energy: 11501.0 ( 24.63 by residue)
QMean score : 0.148
|
|
|