Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIVAAITAKIQKAKLPTHVEATRKDGFEKDSVILLEQIRTIDKQR--LTDKITHLDEDLM---AKVNKALEVSLGVVEF
1UB4 Chain:A ((10-107))
-----GDLIWVDFDP-------GHRPAVVLSPFMYN--NKTGMCLCVPCTTQSKGYPFEVVLS---GQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKIN------------
General information:
TITO was launched using:
RESULT:
Template:
1UB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -33043 for 566 contacts (-58.4/contact) +
2D Compatibility (PS) -9019 + (NN) 1674 + (LL) 2572
1D Compatibility (HY) -3200 + (ID) 1350
Total energy: -42366.0 ( -74.85 by residue)
QMean score : 0.214
(partial model without unconserved sides chains):
PDB file :
Tito_1UB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UB4-query.scw
PDB file :
Tito_Scwrl_1UB4.pdb
: