Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LVKVVFVCLGNICRSPMAEGLFRKEVANAGLTDEIKIDSAATGTWNLGKPPHRGTQEVLKKHGVDYQAMRARKISDADFKEADFIIGMDQQNLADLNALNN---NPDVIIRSLMSFVSGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK
1PHR Chain:A ((8-155))
---VLFVCLGNICRSPIAEAVFRKLVTDQNISDNWVIDSGAVSDWNVGRSPDPRAVSCLRNHGIN-TAHKARQVTKEDFVTFDYILCMDESNLRDLNRKSNQVKNCRAKIELLGSY-DPQKQLIIEDPYYGNDAD-FETVYQQCVRCCRAFLEK-
General information:
TITO was launched using:
RESULT:
Template:
1PHR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -51811 for 1219 contacts (-42.5/contact) +
2D Compatibility (PS) -16030 + (NN) -10682 + (LL) 884
1D Compatibility (HY) -13200 + (ID) 3050
Total energy: -93889.0 ( -77.02 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1PHR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1PHR-query.scw
PDB file :
Tito_Scwrl_1PHR.pdb
: