Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEKNYKFLLWIYIFWFLGSVLLVSLHIIPPELTAVQSLFLVFTGVFAAVFFIMQYGKWLGSAITLLIFVVSTCIEWMQLSYTDEYIGSTLGGSVYGIPITMGFIWVGMVAGTHIIAREITLKINIDWIRGGIYSFIAATMVMIFEVLIEPITM--QSKQLYITQNGFTILQLSDFINWWLLGLILHLMIYFILSLTDSWERLKYPDLKSEIVIVYWIIIAFFVF----LSFYLDLWTSIAIIIVSNIIFTACYFFSLEKETQTKKKSE----
4YMU Chain:C ((1-214))
-MTVDFLSMVKYTPLFISGLIMTLKLTFLAVTIGVLMGLFIALMKM---------------SSIKPIKLVASSYIEVIR-----------------GTPLLVQLLLIYNGLMQ--------FGMNIPAFTAGVSALAINSSAYVAEIIRAGIQAVDPGQNEAARSLGMTHAMAMRYV------------------IIPQAIKNILPALGNEFIVMLKESAIVSVIGFADLTRQADIIQSVTYRYFEPYIIIAAIYFVMTLTFSKLLSLFERRL
General information:
TITO was launched using:
RESULT:
Template:
4YMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -194686 for 1462 contacts (-133.2/contact) +
2D Compatibility (PS) -20087 + (NN) 4959 + (LL) 5548
1D Compatibility (HY) -14000 + (ID) 1450
Total energy: -219716.0 ( -150.28 by residue)
QMean score : 0.216
(partial model without unconserved sides chains):
PDB file :
Tito_4YMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMU-query.scw
PDB file :
Tito_Scwrl_4YMU.pdb
: