Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSEKAVQLTEFVGTAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGILGARTGAGPHIMAADEAVKATNTEVVKIELPRDTKGGAGHGS-------LIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHIEL--QYTARASHALEKAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPADGTSFSNEVILCISGDSGAVRQAVISAREIGKKLLGALGDEPKNDRPSYI
4TME Chain:A ((15-200))
----------------------IISNVSPEMAKKLELEPHHKSLGLITADCDDVTYT-ALDEATKAAEVDVV---YARSMYAGAGNASTKLAGEVIGILAGPSPAEVRSGLNATLDFIDSGVGFVSANEDDSICYYAQCVSRTGSYLSKTAGIREGEALAYLV-APPLEAMYALDAALKAADVEMCEFFAPPTETNFAGAL---LTGSQSACKAAC--------------------------
General information:
TITO was launched using:
RESULT:
Template:
4TME.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66161 for 1380 contacts (-47.9/contact) +
2D Compatibility (PS) -18645 + (NN) -5549 + (LL) 3580
1D Compatibility (HY) -11600 + (ID) 2600
Total energy: -100975.0 ( -73.17 by residue)
QMean score : 0.365
(partial model without unconserved sides chains):
PDB file :
Tito_4TME.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4TME-query.scw
PDB file :
Tito_Scwrl_4TME.pdb
: