Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTKWNVY------LTKGEYEPWWFFEEWETSIQEDFSFSDKEAAFLKYQELAEALLSNYPKHQTKKDCLLAAWNEEEVEYCEDCEDDIQTFHGLILFFEGEVYQPTPEEKETIFKRVLTFA
1VFF Chain:A ((49-100))
---WELYRDDIQLMTSLGYNAYRFSIEWSRLFPEENKFN--EDAFMKYREIIDLLLT----------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1VFF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -6790 for 196 contacts (-34.6/contact) +
2D Compatibility (PS) -4996 + (NN) -3121 + (LL) 5116
1D Compatibility (HY) -5200 + (ID) 850
Total energy: -15841.0 ( -80.82 by residue)
QMean score : 0.265
(partial model without unconserved sides chains):
PDB file :
Tito_1VFF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VFF-query.scw
PDB file :
Tito_Scwrl_1VFF.pdb
: