Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LELPFSGQSIIPAAHNQKDMEKILELGLTYMVMLETHVAQLKSLVKYAQA-GGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTR--GNAIMKAKQHKMLAIQRLFMIDSSACNKGVALIQKVQPDCIELLPGII--PEQVQKMTQK--LHIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLW
2V82 Chain:A ((25-178))
-------------------VGAVIDAGFDAVEIPLNSPQW-EQSIPAIVDAYGDKALIGAGTV----LKPEQVDALAR-MGCQLIVTPNIHSEVIRRAVGYGMT-----VCPGCATATEAFT-ALEAGAQALKIFPSSAFGPQYIKALKAVLPSDIAVFAVGGVTP-ENLAQWIDAGCAGAGLGSD---
General information:
TITO was launched using:
RESULT:
Template:
2V82.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91269 for 1123 contacts (-81.3/contact) +
2D Compatibility (PS) -15327 + (NN) -5086 + (LL) 2504
1D Compatibility (HY) -2400 + (ID) 1100
Total energy: -112678.0 ( -100.34 by residue)
QMean score : 0.485
(partial model without unconserved sides chains):
PDB file :
Tito_2V82.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V82-query.scw
PDB file :
Tito_Scwrl_2V82.pdb
: