Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | VAKFTYDVVIIGSGASGTTVAFEAQAA-GLKVAIVEERN---------WGGTCVLRGCDPKKVLIGAREARNLSTRLRGKGI---KQAATISWTDLMAFKETFVENVPESRLASFQEA-GIETFFGAASFQDSHSLQVGD---------DLIYAEKIVIATGATPSTLKVEGKEYIQTSDDFLSLEKLPDSVVFIGGGYISFEFASI---ALAAGRDVHIIHHNSEPLKKFDPDFVAALVANIKDEGIHFHFDTDITKI-ENDGGKLHIKGKDSFSLQTDLIIGATGRMPNIAHLSLENASIDYTKKGIVVNEKLQTPNNPHIYACGDVAATKGAPLTPVVSLEAALVAKNVIGVNEKIT-YPAIPSVVFTSPKLASIGISTEEAKANPEKYQIKNHDTTS-WYTYKRTNEQIALAKIIEDRESGQIKGAHFLSEEADYMINYIAILMKANLTLADLQSVIFAYPSPASDLTALN |
| 4APN Chain:A ((25-491)) | -----YDLVVLGAGSGGLEAGWNAAVTHKKKVAVVDVQATHGPPLFAALGGTCVNVGCVPKKLMVTGAQYMDLIRESGGFGWEMDRESLCPNWKTLIAAKNKVVNSINESYKSMFADTEGLSFHMGFGALQDAHTVVVRKSEDPHSDVLETLDTEYILIATGSWPTRLGVPGDEFCITSNEAFYLEDAPKRMLCVGGGYIAVEFAGIFNGYKPCGGYVDLCYRGDLILRGFDTEVRKSLTKQLGANGIRVRTNLNPTKITKNEDGSNHVHFNDGTEEDYDQVMLAIGRVPRSQALQLDKAGVRTGKNGAVQVDAYSKTSVDNIYAIGDV--TNRVMLTPVAINEGAAFVETVFGGKPRATDHTKVACAVFSIPPIGTCGMTEEEAAKNYETVAVYASSFTPLMHNISGSKHKEFMIRIITNESNGEVLGVHMLGDSAPEIIQSVGICMKMGAKISDFHSTIGVHPTSAEELCSM- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4APN.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -217312 for 3737 contacts (-58.2/contact) +
2D Compatibility (PS) -47408 + (NN) -15933 + (LL) 792
1D Compatibility (HY) -26000 + (ID) 6600
Total energy: -312461.0 ( -83.61 by residue)
QMean score : 0.388
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