Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLTATQKRFLRKEAHNIQPIFQVGKGSVSPNLIIHVKEALEARELIKISILQNCEEDKQTVAEKISARSGAEIVQV---IGRTIILYKTSVNKQQIKLP
3KA5 Chain:A ((3-49))
---------------------------------------------VKTKRFAIKPMSEEEAVLEMELLGHNFFVFQNGDSNEVNVVYKRKDG-------
General information:
TITO was launched using:
RESULT:
Template:
3KA5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4861 for 196 contacts (24.8/contact) +
2D Compatibility (PS) -4129 + (NN) 1715 + (LL) 4688
1D Compatibility (HY) 400 + (ID) 200
Total energy: 7335.0 ( 37.42 by residue)
QMean score : 0.137
(partial model without unconserved sides chains):
PDB file :
Tito_3KA5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3KA5-query.scw
PDB file :
Tito_Scwrl_3KA5.pdb
: